List of Academic Publications (29)
The list contains mostly peer-reviewed articles published in journals with Impact Factor. Please click the article title to download it either as a preprint from arXiv, or from a web page of an open access publisher. If not available, feel free to drop me a line. I'll do my best to help you.
2022
29. Binding of the peptide deformylase on the ribosome surface modulates the structure and dynamics of the exit tunnel interior
H McGrath, M Černeková, MH Kolář, 2022.
28. The Effect of Off-Center σ-Hole on the Atom-Centered Partial Charges in Halogenated Molecules
A Leskourová, MH Kolář, Journal of Computational Chemistry, 2022, 12, 864-869.
27. Folding of VemP into translation-arresting secondary structure is driven by the ribosome exit tunnel
MH Kolář, G Nagy, J Kunkel, SM Vaiana, LV Bock, H Grubmüller, Nucleic Acids Research, 2022, gkac038.
2021
26. Kotranslační děje aneb první okamžiky života proteinu (in Czech)
MH Kolář, Chemické listy, 2021, 115, 539-578.
25. Atomistic simulations of the human proteasome inhibited by a covalent ligand
MH Kolář, LV Bock, H Grubmüller, High Performance Computing in Science & Engineering 2021, 47-57.
2020
24. Assessment of Scalar Relativistic Effects on Halogen Bonding and Sigma-Hole Properties
MH Kolář, D Suchá, M Pitoňák, The International Journal of Quantum Chemistry, 2020, e26392.
23. Antitubercular Polyhalogenated Phenothiazines and Phenoselenazine with Reduced Binding to CNS Receptors
MG Nizi, J Desantis, Y Nakatani, S Massari, MA Mazzarella, G Shetye, S Sabatini, ML Barreca, G Manfroni, T Felicetti, R Rushton-Green, K Hards, G Latacz, G Satała, A Bojarski, V Ceccheti, MH Kolář, J Handzlik, G Cook, S Franzblau, O Tabarrini, European Journal of Medicinal Chemistry, 2020, 201, 112420.
2019
2018
22. Molecular Simulations of the Ribosome and Associated Translation Factors
LV Bock, MH Kolář, H Grubmüller, Current Opinion in Structural Biology, 2018, 49, 27-35.
2017
21. Halogen Bonding in Nucleic Acid Complexes
MH Kolář, O Tabarrini, The Journal of Medicinal Chemistry, 2017, 60, 8681-8690.
20. Reaction Path Averaging: Characterizing Structural Response of the DNA Double Helix upon Electron Transfer
MH Kolář, T Kubař, The Journal of Physical Chemistry B, 2017, 121, 1520-1532.
List of Popular Science Articles (16)
16. Who applies for Czech research grants and how successful is.
MH Kolář, R Hladík, Vesmír, 2020, 99, 134, in Czech.
15. Structure and Dynamics of a Ribosome-Regulatory Peptide
MH Kolář in Supercomputing in Science and Engineering 2017-18, K. Pešatová et al. Eds, 2019, ISBN 978-80-248-4289-9.
14. A thin line of authorship
MH Kolář, P Slavíček, Vesmír, 2019, 98, 50, in Czech.
13. Structure and Dynamics of Nascent Peptides in the Ribosome Exit Tunnel
H Grubmüller, MH Kolář, LV Bock, AC Vaiana, in High Performance Computing in Science and Engineering, P. Bastian et al. Eds, 2018.
12. Chemistry Olympiad or On the Life of Czech Young Chemists
MH Kolář, P Slavíček, Vesmír, online www.vesmir.cz, in Czech.
Other Texts (7)
7. From the Max Planck Institute to a university in Prague
MH Kolář, for Czexpats in Science, 2019, in Czech.
6. Don't be affraid of complicated equations (preparatory text for 53rd Chemistry Olympiad)
MH Kolář, V Palivec, 2016, in Czech.
5. Molecular modelling in drug development
M Kolář, PhD thesis, 2013
4. Computer Simulations with Gromacs Program Package, tutorial text for a project of Palacký University, Olomouc, entitled Advanced Education in Research and Application of Nanomaterials
M Kolář, 2011, in Czech.
3. Don't be afraid of quanta (preparatory text for 46th Chemistry Olympiad)
T Kubař, M Kolář, 2009, in Czech
2. The role of London dispersion forces in DNA structure stability: in silico experiment
M Kolář, MSc thesis, 2009
1. Structure and stabilization energy of phenol dimer
M Kolář, BSc thesis, 2007