Kolář lab at UCT Prague

List of Academic Publications (33)

The list contains mostly peer-reviewed articles published in journals with Impact Factor. Please click the article title to download it either as a preprint from arXiv, or from a web page of an open access publisher. If not available, feel free to drop me a line. I'll do my best to help you.


33. Three epochs of nascent protein translocation through the ribosome exit tunnel

MH Kolář, H Mc Grath, FC Nepomuceno, M Černeková, submitted 2024.

32. The interplay between peptides and RNA is critical for protoribosome compartmentalization and stability

S Codispoti, T Yamaguchi, M Makarov, VG Giacobelli, M Mašek, MH Kolář, AC Sanchez Rocha, K Fujishima, G Zanchetta, K Hlouchová, submitted 2024.


30. Simulation of complex biomolecular systems: the ribosome challenge

LV Bock, S Gabrielli, MH Kolář, H Grubmüller, Annual Review of Biophysics, 2023.


28. The effect of off-center σ-hole on the atom-centered partial charges in halogenated molecules

A Leskourová, MH Kolář, Journal of Computational Chemistry, 2022, 12, 864-869.

27. Folding of VemP into translation-arresting secondary structure is driven by the ribosome exit tunnel

MH Kolář, G Nagy, J Kunkel, SM Vaiana, LV Bock, H Grubmüller, Nucleic Acids Research, 2022, gkac038.


25. Atomistic simulations of the human proteasome inhibited by a covalent ligand

MH Kolář, LV Bock, H Grubmüller, High Performance Computing in Science & Engineering 2021, 47-57.


24. Assessment of Scalar Relativistic Effects on Halogen Bonding and Sigma-Hole Properties

MH Kolář, D Suchá, M Pitoňák, The International Journal of Quantum Chemistry, 2020, e26392.

23. Antitubercular Polyhalogenated Phenothiazines and Phenoselenazine with Reduced Binding to CNS Receptors

MG Nizi, J Desantis, Y Nakatani, S Massari, MA Mazzarella, G Shetye, S Sabatini, ML Barreca, G Manfroni, T Felicetti, R Rushton-Green, K Hards, G Latacz, G Satała, A Bojarski, V Ceccheti, MH Kolář, J Handzlik, G Cook, S Franzblau, O Tabarrini, European Journal of Medicinal Chemistry, 2020, 201, 112420.

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List of Popular Science Articles (17)

16. Where did Czech chemists disappear?

MH Kolář, Vesmír, 2023, 102, 12, in Czech.

16. Who applies for Czech research grants and how successful is.

MH Kolář, R Hladík, Vesmír, 2020, 99, 134, in Czech.

15. Structure and Dynamics of a Ribosome-Regulatory Peptide

MH Kolář in Supercomputing in Science and Engineering 2017-18, K. Pešatová et al. Eds, 2019, ISBN 978-80-248-4289-9.

14. A thin line of authorship

MH Kolář, P Slavíček, Vesmír, 2019, 98, 50, in Czech.

13. Structure and Dynamics of Nascent Peptides in the Ribosome Exit Tunnel

H Grubmüller, MH Kolář, LV Bock, AC Vaiana, in High Performance Computing in Science and Engineering, P. Bastian et al. Eds, 2018.

12. Chemistry Olympiad or On the Life of Czech Young Chemists

MH Kolář, P Slavíček, Vesmír, online www.vesmir.cz, in Czech.

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Other Texts (7)

7. From the Max Planck Institute to a university in Prague

MH Kolář, for Czexpats in Science, 2019, in Czech.

5. Molecular modelling in drug development

M Kolář, PhD thesis, 2013